Detailed information of SNP:
|
SNP ID:
sf1125028084(Gbrowse)
Chromosome: chr11 Position: 25028084 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1415 | 76.33% | 23.67% |
| All Indica | 798 | 66.42% | 33.58% |
| All Japonica | 496 | 90.52% | 9.48% |
| Aus | 66 | 90.91% | 9.09% |
| Indica I | 374 | 83.42% | 16.58% |
| Indica II | 213 | 74.18% | 25.82% |
| Indica Intermediate | 211 | 28.44% | 71.56% |
| Temperate Japonica | 335 | 97.61% | 2.39% |
| Tropical Japonica | 93 | 61.29% | 38.71% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125028084 | T->G | LOC_Os11g42350(LOC_Os11g42350.3) | INTRON |
| sf1125028084 | T->G | LOC_Os11g42350(LOC_Os11g42350.2) | INTRON |
| sf1125028084 | T->G | LOC_Os11g42350(LOC_Os11g42350.1) | INTRON |