Detailed information of SNP:
|
SNP ID:
sf1125028161(Gbrowse)
Chromosome: chr11 Position: 25028161 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 76.52% | 23.48% |
| All Indica | 798 | 66.92% | 33.08% |
| All Japonica | 497 | 90.54% | 9.46% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 374 | 84.22% | 15.78% |
| Indica II | 213 | 74.18% | 25.82% |
| Indica Intermediate | 211 | 28.91% | 71.09% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 94 | 60.64% | 39.36% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125028161 | C->T | LOC_Os11g42350(LOC_Os11g42350.3) | Non-Synonymous SNP |
| sf1125028161 | C->T | LOC_Os11g42350(LOC_Os11g42350.2) | Non-Synonymous SNP |
| sf1125028161 | C->T | LOC_Os11g42350(LOC_Os11g42350.1) | Non-Synonymous SNP |