Detailed information of SNP:
SNP ID:
sf1125028161(Gbrowse)
Chromosome: chr11 Position: 25028161 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
---|---|---|---|
All | 1418 | 76.52% | 23.48% |
All Indica | 798 | 66.92% | 33.08% |
All Japonica | 497 | 90.54% | 9.46% |
Aus | 67 | 91.04% | 8.96% |
Indica I | 374 | 84.22% | 15.78% |
Indica II | 213 | 74.18% | 25.82% |
Indica Intermediate | 211 | 28.91% | 71.09% |
Temperate Japonica | 335 | 97.91% | 2.09% |
Tropical Japonica | 94 | 60.64% | 39.36% |
Japonica Intermediate | 68 | 95.59% | 4.41% |
Group VI/Aromatic | 14 | 100.00% | 0.00% |
Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf1125028161 | C->T | LOC_Os11g42350(LOC_Os11g42350.3) | Non-Synonymous SNP |
sf1125028161 | C->T | LOC_Os11g42350(LOC_Os11g42350.2) | Non-Synonymous SNP |
sf1125028161 | C->T | LOC_Os11g42350(LOC_Os11g42350.1) | Non-Synonymous SNP |