Detailed information of SNP:
|
SNP ID:
sf1125031965(Gbrowse)
Chromosome: chr11 Position: 25031965 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1400 | 79.43% | 20.57% |
| All Indica | 794 | 72.80% | 27.20% |
| All Japonica | 483 | 86.96% | 13.04% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 371 | 55.53% | 44.47% |
| Indica II | 212 | 83.96% | 16.04% |
| Indica Intermediate | 211 | 91.94% | 8.06% |
| Temperate Japonica | 330 | 88.18% | 11.82% |
| Tropical Japonica | 94 | 92.55% | 7.45% |
| Japonica Intermediate | 59 | 71.19% | 28.81% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125031965 | T->A | LOC_Os11g42360(LOC_Os11g42360.1) | Non-Synonymous SNP |