Detailed information of SNP:
|
SNP ID:
sf1125034121(Gbrowse)
Chromosome: chr11 Position: 25034121 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 73.54% | 26.46% |
| All Indica | 797 | 66.00% | 34.00% |
| All Japonica | 497 | 88.53% | 11.47% |
| Aus | 67 | 65.67% | 34.33% |
| Indica I | 374 | 49.20% | 50.80% |
| Indica II | 212 | 72.17% | 27.83% |
| Indica Intermediate | 211 | 89.57% | 10.43% |
| Temperate Japonica | 335 | 97.61% | 2.39% |
| Tropical Japonica | 94 | 56.38% | 43.62% |
| Japonica Intermediate | 68 | 88.24% | 11.76% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125034121 | C->T | INTERGENIC | None |