Detailed information of SNP:
|
SNP ID:
sf1125035584(Gbrowse)
Chromosome: chr11 Position: 25035584 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 78.73% | 21.27% |
| All Indica | 796 | 70.10% | 29.90% |
| All Japonica | 496 | 91.33% | 8.67% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 373 | 86.86% | 13.14% |
| Indica II | 213 | 77.00% | 23.00% |
| Indica Intermediate | 210 | 33.33% | 66.67% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 94 | 64.89% | 35.11% |
| Japonica Intermediate | 67 | 95.52% | 4.48% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125035584 | A->T | LOC_Os11g42370(LOC_Os11g42370.1) | Non-Synonymous SNP |