Detailed information of SNP:
|
SNP ID:
sf1125039275(Gbrowse)
Chromosome: chr11 Position: 25039275 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 84.54% | 15.46% |
| All Indica | 798 | 74.19% | 25.81% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 374 | 65.51% | 34.49% |
| Indica II | 213 | 73.24% | 26.76% |
| Indica Intermediate | 211 | 90.52% | 9.48% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125039275 | A->G | INTERGENIC | None |