Detailed information of SNP:
|
SNP ID:
sf1125048040(Gbrowse)
Chromosome: chr11 Position: 25048040 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1413 | 77.64% | 22.36% |
| All Indica | 795 | 68.55% | 31.45% |
| All Japonica | 497 | 91.15% | 8.85% |
| Aus | 65 | 90.77% | 9.23% |
| Indica I | 374 | 84.49% | 15.51% |
| Indica II | 211 | 76.30% | 23.70% |
| Indica Intermediate | 210 | 32.38% | 67.62% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 94 | 63.83% | 36.17% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125048040 | T->G | LOC_Os11g42390(LOC_Os11g42390.1) | INTRON |