Detailed information of SNP:
|
SNP ID:
sf1125052484(Gbrowse)
Chromosome: chr11 Position: 25052484 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1392 | 80.39% | 19.61% |
| All Indica | 774 | 72.74% | 27.26% |
| All Japonica | 495 | 96.57% | 3.43% |
| Aus | 67 | 65.67% | 34.33% |
| Indica I | 370 | 60.54% | 39.46% |
| Indica II | 211 | 80.09% | 19.91% |
| Indica Intermediate | 193 | 88.08% | 11.92% |
| Temperate Japonica | 334 | 96.71% | 3.29% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125052484 | T->C | INTERGENIC | None |