Detailed information of SNP:
|
SNP ID:
sf1125053607(Gbrowse)
Chromosome: chr11 Position: 25053607 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1403 | 73.49% | 26.51% |
| All Indica | 791 | 61.06% | 38.94% |
| All Japonica | 494 | 95.95% | 4.05% |
| Aus | 64 | 68.75% | 31.25% |
| Indica I | 370 | 58.65% | 41.35% |
| Indica II | 211 | 63.51% | 36.49% |
| Indica Intermediate | 210 | 62.86% | 37.14% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 92 | 88.04% | 11.96% |
| Japonica Intermediate | 67 | 95.52% | 4.48% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 40 | 75.00% | 25.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125053607 | A->C | LOC_Os11g42400(LOC_Os11g42400.1) | Synonymous |