Detailed information of SNP:
|
SNP ID:
sf1125054484(Gbrowse)
Chromosome: chr11 Position: 25054484 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 88.13% | 11.87% |
| All Indica | 796 | 82.04% | 17.96% |
| All Japonica | 497 | 98.19% | 1.81% |
| Aus | 66 | 89.39% | 10.61% |
| Indica I | 373 | 91.15% | 8.85% |
| Indica II | 213 | 79.81% | 20.19% |
| Indica Intermediate | 210 | 68.10% | 31.90% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 91.49% | 8.51% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125054484 | C->T | INTERGENIC | None |