Detailed information of SNP:
|
SNP ID:
sf1125055348(Gbrowse)
Chromosome: chr11 Position: 25055348 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 76.73% | 23.27% |
| All Indica | 799 | 67.83% | 32.17% |
| All Japonica | 496 | 90.52% | 9.48% |
| Aus | 67 | 85.07% | 14.93% |
| Indica I | 375 | 85.07% | 14.93% |
| Indica II | 213 | 75.59% | 24.41% |
| Indica Intermediate | 211 | 29.38% | 70.62% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 93 | 60.22% | 39.78% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125055348 | C->T | INTERGENIC | None |