Detailed information of SNP:
|
SNP ID:
sf1125059561(Gbrowse)
Chromosome: chr11 Position: 25059561 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1396 | 57.16% | 42.84% |
| All Indica | 785 | 41.66% | 58.34% |
| All Japonica | 488 | 87.09% | 12.91% |
| Aus | 67 | 40.30% | 59.70% |
| Indica I | 366 | 45.63% | 54.37% |
| Indica II | 208 | 55.29% | 44.71% |
| Indica Intermediate | 211 | 21.33% | 78.67% |
| Temperate Japonica | 328 | 95.43% | 4.57% |
| Tropical Japonica | 93 | 54.84% | 45.16% |
| Japonica Intermediate | 67 | 91.04% | 8.96% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125059561 | T->C | LOC_Os11g42410(LOC_Os11g42410.1) | INTRON |