Detailed information of SNP:
|
SNP ID:
sf1125059666(Gbrowse)
Chromosome: chr11 Position: 25059666 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 95.77% | 4.23% |
| All Indica | 799 | 98.37% | 1.63% |
| All Japonica | 497 | 98.59% | 1.41% |
| Aus | 67 | 65.67% | 34.33% |
| Indica I | 375 | 97.07% | 2.93% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125059666 | A->G | LOC_Os11g42410(LOC_Os11g42410.1) | INTRON |