Detailed information of SNP:
|
SNP ID:
sf1125064287(Gbrowse)
Chromosome: chr11 Position: 25064287 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 94.07% | 5.93% |
| All Indica | 799 | 97.00% | 3.00% |
| All Japonica | 495 | 91.72% | 8.28% |
| Aus | 67 | 80.60% | 19.40% |
| Indica I | 375 | 97.60% | 2.40% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 94.31% | 5.69% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 92 | 61.96% | 38.04% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125064287 | G->A | LOC_Os11g42420(LOC_Os11g42420.1) | Non-Synonymous SNP |
| sf1125064287 | G->A | LOC_Os11g42420(LOC_Os11g42420.2) | Non-Synonymous SNP |