Detailed information of SNP:
|
SNP ID:
sf1125070342(Gbrowse)
Chromosome: chr11 Position: 25070342 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1415 | 94.35% | 5.65% |
| All Indica | 799 | 97.12% | 2.88% |
| All Japonica | 493 | 92.09% | 7.91% |
| Aus | 67 | 80.60% | 19.40% |
| Indica I | 375 | 97.60% | 2.40% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 94.31% | 5.69% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 90 | 63.33% | 36.67% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125070342 | A->G | LOC_Os11g42420(LOC_Os11g42420.1) | Synonymous |
| sf1125070342 | A->G | LOC_Os11g42420(LOC_Os11g42420.2) | Synonymous |