Detailed information of SNP:
|
SNP ID:
sf1125078047(Gbrowse)
Chromosome: chr11 Position: 25078047 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 58.99% | 41.01% |
| All Indica | 799 | 42.68% | 57.32% |
| All Japonica | 497 | 90.34% | 9.66% |
| Aus | 67 | 40.30% | 59.70% |
| Indica I | 375 | 46.93% | 53.07% |
| Indica II | 213 | 56.34% | 43.66% |
| Indica Intermediate | 211 | 21.33% | 78.67% |
| Temperate Japonica | 335 | 96.42% | 3.58% |
| Tropical Japonica | 94 | 64.89% | 35.11% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125078047 | G->A | LOC_Os11g42440(LOC_Os11g42440.1) | INTRON |