Detailed information of SNP:
|
SNP ID:
sf1125078859(Gbrowse)
Chromosome: chr11 Position: 25078859 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1415 | 67.21% | 32.79% |
| All Indica | 798 | 56.14% | 43.86% |
| All Japonica | 497 | 91.55% | 8.45% |
| Aus | 65 | 43.08% | 56.92% |
| Indica I | 375 | 53.07% | 46.93% |
| Indica II | 213 | 59.62% | 40.38% |
| Indica Intermediate | 210 | 58.10% | 41.90% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 94 | 65.96% | 34.04% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 48.78% | 51.22% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125078859 | T->C | LOC_Os11g42440(LOC_Os11g42440.1) | INTRON |