Detailed information of SNP:
|
SNP ID:
sf1125078879(Gbrowse)
Chromosome: chr11 Position: 25078879 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 93.86% | 6.14% |
| All Indica | 799 | 97.87% | 2.13% |
| All Japonica | 496 | 94.96% | 5.04% |
| Aus | 67 | 65.67% | 34.33% |
| Indica I | 375 | 96.53% | 3.47% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 93 | 78.49% | 21.51% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125078879 | G->A | LOC_Os11g42440(LOC_Os11g42440.1) | INTRON |