Detailed information of SNP:
|
SNP ID:
sf1125079678(Gbrowse)
Chromosome: chr11 Position: 25079678 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 82.84% | 17.16% |
| All Indica | 799 | 76.72% | 23.28% |
| All Japonica | 497 | 98.19% | 1.81% |
| Aus | 65 | 61.54% | 38.46% |
| Indica I | 375 | 64.27% | 35.73% |
| Indica II | 213 | 82.63% | 17.37% |
| Indica Intermediate | 211 | 92.89% | 7.11% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 78.05% | 21.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125079678 | T->C | LOC_Os11g42440(LOC_Os11g42440.1) | Synonymous |