Detailed information of SNP:
|
SNP ID:
sf1125080008(Gbrowse)
Chromosome: chr11 Position: 25080008 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 55.43% | 44.57% |
| All Indica | 799 | 65.21% | 34.79% |
| All Japonica | 496 | 39.11% | 60.89% |
| Aus | 67 | 56.72% | 43.28% |
| Indica I | 375 | 81.87% | 18.13% |
| Indica II | 213 | 72.77% | 27.23% |
| Indica Intermediate | 211 | 27.96% | 72.04% |
| Temperate Japonica | 334 | 50.30% | 49.70% |
| Tropical Japonica | 94 | 7.45% | 92.55% |
| Japonica Intermediate | 68 | 27.94% | 72.06% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125080008 | C->G | LOC_Os11g42440(LOC_Os11g42440.1) | INTRON |