Detailed information of SNP:
|
SNP ID:
sf1125081598(Gbrowse)
Chromosome: chr11 Position: 25081598 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 50.64% | 49.36% |
| All Indica | 798 | 42.48% | 57.52% |
| All Japonica | 495 | 67.47% | 32.53% |
| Aus | 67 | 40.30% | 59.70% |
| Indica I | 375 | 46.67% | 53.33% |
| Indica II | 212 | 56.13% | 43.87% |
| Indica Intermediate | 211 | 21.33% | 78.67% |
| Temperate Japonica | 334 | 66.47% | 33.53% |
| Tropical Japonica | 94 | 63.83% | 36.17% |
| Japonica Intermediate | 67 | 77.61% | 22.39% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 40.48% | 59.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125081598 | A->G | INTERGENIC | None |