Detailed information of SNP:
|
SNP ID:
sf1125081856(Gbrowse)
Chromosome: chr11 Position: 25081856 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 75.05% | 24.95% |
| All Indica | 799 | 65.96% | 34.04% |
| All Japonica | 497 | 92.15% | 7.85% |
| Aus | 67 | 56.72% | 43.28% |
| Indica I | 375 | 82.40% | 17.60% |
| Indica II | 213 | 74.65% | 25.35% |
| Indica Intermediate | 211 | 27.96% | 72.04% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 94 | 67.02% | 32.98% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125081856 | C->T | INTERGENIC | None |