Detailed information of SNP:
|
SNP ID:
sf1125088876(Gbrowse)
Chromosome: chr11 Position: 25088876 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 77.28% | 22.72% |
| All Indica | 797 | 67.25% | 32.75% |
| All Japonica | 497 | 96.18% | 3.82% |
| Aus | 67 | 71.64% | 28.36% |
| Indica I | 374 | 62.57% | 37.43% |
| Indica II | 213 | 66.20% | 33.80% |
| Indica Intermediate | 210 | 76.67% | 23.33% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 94 | 89.36% | 10.64% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125088876 | C->T | INTERGENIC | None |