Detailed information of SNP:
|
SNP ID:
sf1125088901(Gbrowse)
Chromosome: chr11 Position: 25088901 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1411 | 51.88% | 48.12% |
| All Indica | 797 | 42.91% | 57.09% |
| All Japonica | 492 | 73.17% | 26.83% |
| Aus | 67 | 22.39% | 77.61% |
| Indica I | 373 | 46.92% | 53.08% |
| Indica II | 213 | 57.28% | 42.72% |
| Indica Intermediate | 211 | 21.33% | 78.67% |
| Temperate Japonica | 331 | 73.41% | 26.59% |
| Tropical Japonica | 94 | 63.83% | 36.17% |
| Japonica Intermediate | 67 | 85.07% | 14.93% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 36.59% | 63.41% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125088901 | A->G | INTERGENIC | None |