Detailed information of SNP:
|
SNP ID:
sf1125089443(Gbrowse)
Chromosome: chr11 Position: 25089443 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 58.28% | 41.72% |
| All Indica | 799 | 42.80% | 57.20% |
| All Japonica | 497 | 90.54% | 9.46% |
| Aus | 67 | 22.39% | 77.61% |
| Indica I | 375 | 47.20% | 52.80% |
| Indica II | 213 | 56.34% | 43.66% |
| Indica Intermediate | 211 | 21.33% | 78.67% |
| Temperate Japonica | 335 | 96.72% | 3.28% |
| Tropical Japonica | 94 | 64.89% | 35.11% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125089443 | T->G | INTERGENIC | None |