Detailed information of SNP:
|
SNP ID:
sf1125089616(Gbrowse)
Chromosome: chr11 Position: 25089616 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 80.78% | 19.22% |
| All Indica | 799 | 99.37% | 0.63% |
| All Japonica | 493 | 47.26% | 52.74% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 333 | 52.85% | 47.15% |
| Tropical Japonica | 93 | 39.78% | 60.22% |
| Japonica Intermediate | 67 | 29.85% | 70.15% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125089616 | C->A | INTERGENIC | None |