Detailed information of SNP:
|
SNP ID:
sf1125099843(Gbrowse)
Chromosome: chr11 Position: 25099843 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 89.41% | 10.59% |
| All Indica | 798 | 82.58% | 17.42% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 375 | 91.20% | 8.80% |
| Indica II | 213 | 82.63% | 17.37% |
| Indica Intermediate | 210 | 67.14% | 32.86% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 82.93% | 17.07% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125099843 | C->T | INTERGENIC | None |