Detailed information of SNP:
|
SNP ID:
sf1125101788(Gbrowse)
Chromosome: chr11 Position: 25101788 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 61.96% | 38.04% |
| All Indica | 799 | 63.58% | 36.42% |
| All Japonica | 495 | 67.47% | 32.53% |
| Aus | 67 | 22.39% | 77.61% |
| Indica I | 375 | 78.40% | 21.60% |
| Indica II | 213 | 72.77% | 27.23% |
| Indica Intermediate | 211 | 27.96% | 72.04% |
| Temperate Japonica | 335 | 66.57% | 33.43% |
| Tropical Japonica | 93 | 63.44% | 36.56% |
| Japonica Intermediate | 67 | 77.61% | 22.39% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125101788 | T->C | INTERGENIC | None |