Detailed information of SNP:
|
SNP ID:
sf1125103214(Gbrowse)
Chromosome: chr11 Position: 25103214 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 91.97% | 8.03% |
| All Indica | 799 | 89.74% | 10.26% |
| All Japonica | 497 | 98.39% | 1.61% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 375 | 96.80% | 3.20% |
| Indica II | 213 | 82.63% | 17.37% |
| Indica Intermediate | 211 | 84.36% | 15.64% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125103214 | C->T | INTERGENIC | None |