Detailed information of SNP:
|
SNP ID:
sf1125104879(Gbrowse)
Chromosome: chr11 Position: 25104879 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1385 | 89.31% | 10.69% |
| All Indica | 777 | 82.63% | 17.37% |
| All Japonica | 487 | 99.79% | 0.21% |
| Aus | 66 | 84.85% | 15.15% |
| Indica I | 362 | 67.96% | 32.04% |
| Indica II | 205 | 96.59% | 3.41% |
| Indica Intermediate | 210 | 94.29% | 5.71% |
| Temperate Japonica | 326 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125104879 | T->C | INTERGENIC | None |