Detailed information of SNP:
|
SNP ID:
sf1125106191(Gbrowse)
Chromosome: chr11 Position: 25106191 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1409 | 52.09% | 47.91% |
| All Indica | 797 | 44.67% | 55.33% |
| All Japonica | 490 | 63.06% | 36.94% |
| Aus | 67 | 56.72% | 43.28% |
| Indica I | 375 | 49.07% | 50.93% |
| Indica II | 213 | 57.28% | 42.72% |
| Indica Intermediate | 209 | 23.92% | 76.08% |
| Temperate Japonica | 335 | 79.40% | 20.60% |
| Tropical Japonica | 87 | 10.34% | 89.66% |
| Japonica Intermediate | 68 | 50.00% | 50.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 41.46% | 58.54% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125106191 | G->A | INTERGENIC | None |