Detailed information of SNP:
|
SNP ID:
sf1125110376(Gbrowse)
Chromosome: chr11 Position: 25110376 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 52.08% | 47.92% |
| All Indica | 799 | 57.82% | 42.18% |
| All Japonica | 497 | 39.44% | 60.56% |
| Aus | 67 | 59.70% | 40.30% |
| Indica I | 375 | 54.13% | 45.87% |
| Indica II | 213 | 42.72% | 57.28% |
| Indica Intermediate | 211 | 79.62% | 20.38% |
| Temperate Japonica | 335 | 20.90% | 79.10% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 68 | 54.41% | 45.59% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125110376 | C->T | INTERGENIC | None |