Detailed information of SNP:
|
SNP ID:
sf1125112695(Gbrowse)
Chromosome: chr11 Position: 25112695 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 50.53% | 49.47% |
| All Indica | 799 | 57.57% | 42.43% |
| All Japonica | 497 | 37.22% | 62.78% |
| Aus | 67 | 53.73% | 46.27% |
| Indica I | 375 | 54.13% | 45.87% |
| Indica II | 213 | 42.25% | 57.75% |
| Indica Intermediate | 211 | 79.15% | 20.85% |
| Temperate Japonica | 335 | 21.19% | 78.81% |
| Tropical Japonica | 94 | 81.91% | 18.09% |
| Japonica Intermediate | 68 | 54.41% | 45.59% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125112695 | T->C | INTERGENIC | None |