Detailed information of SNP:
|
SNP ID:
sf1125114593(Gbrowse)
Chromosome: chr11 Position: 25114593 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 53.84% | 46.16% |
| All Indica | 799 | 49.81% | 50.19% |
| All Japonica | 497 | 63.18% | 36.82% |
| Aus | 67 | 40.30% | 59.70% |
| Indica I | 375 | 54.40% | 45.60% |
| Indica II | 213 | 58.22% | 41.78% |
| Indica Intermediate | 211 | 33.18% | 66.82% |
| Temperate Japonica | 335 | 78.51% | 21.49% |
| Tropical Japonica | 94 | 21.28% | 78.72% |
| Japonica Intermediate | 68 | 45.59% | 54.41% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125114593 | G->A | INTERGENIC | None |