Detailed information of SNP:
|
SNP ID:
sf1125115094(Gbrowse)
Chromosome: chr11 Position: 25115094 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 50.88% | 49.12% |
| All Indica | 799 | 57.57% | 42.43% |
| All Japonica | 497 | 37.22% | 62.78% |
| Aus | 67 | 58.21% | 41.79% |
| Indica I | 375 | 54.13% | 45.87% |
| Indica II | 213 | 41.78% | 58.22% |
| Indica Intermediate | 211 | 79.62% | 20.38% |
| Temperate Japonica | 335 | 21.19% | 78.81% |
| Tropical Japonica | 94 | 81.91% | 18.09% |
| Japonica Intermediate | 68 | 54.41% | 45.59% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125115094 | C->T | INTERGENIC | None |