Detailed information of SNP:
|
SNP ID:
sf1125115211(Gbrowse)
Chromosome: chr11 Position: 25115211 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 89.22% | 10.78% |
| All Indica | 799 | 85.48% | 14.52% |
| All Japonica | 497 | 95.57% | 4.43% |
| Aus | 67 | 80.60% | 19.40% |
| Indica I | 375 | 92.00% | 8.00% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 211 | 62.09% | 37.91% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 94 | 82.98% | 17.02% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125115211 | C->T | INTERGENIC | None |