Detailed information of SNP:
|
SNP ID:
sf1125116728(Gbrowse)
Chromosome: chr11 Position: 25116728 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1412 | 60.55% | 39.45% |
| All Indica | 798 | 43.11% | 56.89% |
| All Japonica | 493 | 90.47% | 9.53% |
| Aus | 65 | 63.08% | 36.92% |
| Indica I | 374 | 45.99% | 54.01% |
| Indica II | 213 | 59.62% | 40.38% |
| Indica Intermediate | 211 | 21.33% | 78.67% |
| Temperate Japonica | 335 | 91.94% | 8.06% |
| Tropical Japonica | 90 | 84.44% | 15.56% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125116728 | T->C | INTERGENIC | None |