Detailed information of SNP:
|
SNP ID:
sf1125117676(Gbrowse)
Chromosome: chr11 Position: 25117676 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 78.37% | 21.63% |
| All Indica | 799 | 68.09% | 31.91% |
| All Japonica | 497 | 97.38% | 2.62% |
| Aus | 67 | 83.58% | 16.42% |
| Indica I | 375 | 54.93% | 45.07% |
| Indica II | 213 | 82.16% | 17.84% |
| Indica Intermediate | 211 | 77.25% | 22.75% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125117676 | G->A | INTERGENIC | None |