Detailed information of SNP:
|
SNP ID:
sf1125117681(Gbrowse)
Chromosome: chr11 Position: 25117681 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 64.90% | 35.10% |
| All Indica | 799 | 59.95% | 40.05% |
| All Japonica | 497 | 70.62% | 29.38% |
| Aus | 67 | 77.61% | 22.39% |
| Indica I | 375 | 55.73% | 44.27% |
| Indica II | 213 | 47.89% | 52.11% |
| Indica Intermediate | 211 | 79.62% | 20.38% |
| Temperate Japonica | 335 | 68.06% | 31.94% |
| Tropical Japonica | 94 | 84.04% | 15.96% |
| Japonica Intermediate | 68 | 64.71% | 35.29% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125117681 | C->G | INTERGENIC | None |