Detailed information of SNP:
|
SNP ID:
sf1125123421(Gbrowse)
Chromosome: chr11 Position: 25123421 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1406 | 80.87% | 19.13% |
| All Indica | 795 | 75.22% | 24.78% |
| All Japonica | 488 | 90.37% | 9.63% |
| Aus | 67 | 77.61% | 22.39% |
| Indica I | 373 | 56.30% | 43.70% |
| Indica II | 211 | 95.26% | 4.74% |
| Indica Intermediate | 211 | 88.63% | 11.37% |
| Temperate Japonica | 327 | 93.58% | 6.42% |
| Tropical Japonica | 94 | 88.30% | 11.70% |
| Japonica Intermediate | 67 | 77.61% | 22.39% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125123421 | G->A | INTERGENIC | None |