Detailed information of SNP:
|
SNP ID:
sf1125130458(Gbrowse)
Chromosome: chr11 Position: 25130458 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 61.26% | 38.74% |
| All Indica | 797 | 42.16% | 57.84% |
| All Japonica | 497 | 93.56% | 6.44% |
| Aus | 67 | 61.19% | 38.81% |
| Indica I | 375 | 57.87% | 42.13% |
| Indica II | 212 | 14.15% | 85.85% |
| Indica Intermediate | 210 | 42.38% | 57.62% |
| Temperate Japonica | 335 | 96.72% | 3.28% |
| Tropical Japonica | 94 | 79.79% | 20.21% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125130458 | A->G | LOC_Os11g42510(LOC_Os11g42510.2) | UTR_3_PRIME |
| sf1125130458 | A->G | LOC_Os11g42510(LOC_Os11g42510.1) | UTR_3_PRIME |