Detailed information of SNP:
|
SNP ID:
sf1125134785(Gbrowse)
Chromosome: chr11 Position: 25134785 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 86.39% | 13.61% |
| All Indica | 799 | 96.12% | 3.88% |
| All Japonica | 496 | 68.75% | 31.25% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 89.67% | 10.33% |
| Indica Intermediate | 211 | 96.21% | 3.79% |
| Temperate Japonica | 334 | 81.14% | 18.86% |
| Tropical Japonica | 94 | 44.68% | 55.32% |
| Japonica Intermediate | 68 | 41.18% | 58.82% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125134785 | G->A | LOC_Os11g42510(LOC_Os11g42510.2) | INTRON |
| sf1125134785 | G->A | LOC_Os11g42510(LOC_Os11g42510.1) | INTRON |