Detailed information of SNP:
|
SNP ID:
sf1125135211(Gbrowse)
Chromosome: chr11 Position: 25135211 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 83.02% | 16.98% |
| All Indica | 799 | 99.37% | 0.63% |
| All Japonica | 497 | 53.52% | 46.48% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 335 | 60.30% | 39.70% |
| Tropical Japonica | 94 | 41.49% | 58.51% |
| Japonica Intermediate | 68 | 36.76% | 63.24% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125135211 | G->A | LOC_Os11g42510(LOC_Os11g42510.2) | INTRON |
| sf1125135211 | G->A | LOC_Os11g42510(LOC_Os11g42510.1) | INTRON |