Detailed information of SNP:
|
SNP ID:
sf1125136143(Gbrowse)
Chromosome: chr11 Position: 25136143 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 53.24% | 46.76% |
| All Indica | 799 | 31.41% | 68.59% |
| All Japonica | 496 | 92.74% | 7.26% |
| Aus | 67 | 37.31% | 62.69% |
| Indica I | 375 | 45.60% | 54.40% |
| Indica II | 213 | 18.31% | 81.69% |
| Indica Intermediate | 211 | 19.43% | 80.57% |
| Temperate Japonica | 335 | 96.42% | 3.58% |
| Tropical Japonica | 94 | 76.60% | 23.40% |
| Japonica Intermediate | 67 | 97.01% | 2.99% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125136143 | C->G | LOC_Os11g42510(LOC_Os11g42510.2) | INTRON |
| sf1125136143 | C->G | LOC_Os11g42510(LOC_Os11g42510.1) | Non-Synonymous SNP |