Detailed information of SNP:
|
SNP ID:
sf1125136587(Gbrowse)
Chromosome: chr11 Position: 25136587 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 65.14% | 34.86% |
| All Indica | 799 | 72.72% | 27.28% |
| All Japonica | 496 | 53.83% | 46.17% |
| Aus | 66 | 50.00% | 50.00% |
| Indica I | 375 | 54.67% | 45.33% |
| Indica II | 213 | 92.49% | 7.51% |
| Indica Intermediate | 211 | 84.83% | 15.17% |
| Temperate Japonica | 334 | 43.71% | 56.29% |
| Tropical Japonica | 94 | 79.79% | 20.21% |
| Japonica Intermediate | 68 | 67.65% | 32.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125136587 | T->C | LOC_Os11g42510(LOC_Os11g42510.2) | INTRON |