Detailed information of SNP:
|
SNP ID:
sf1125136895(Gbrowse)
Chromosome: chr11 Position: 25136895 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 59.69% | 40.31% |
| All Indica | 799 | 70.46% | 29.54% |
| All Japonica | 497 | 39.64% | 60.36% |
| Aus | 67 | 67.16% | 32.84% |
| Indica I | 375 | 54.40% | 45.60% |
| Indica II | 213 | 92.49% | 7.51% |
| Indica Intermediate | 211 | 76.78% | 23.22% |
| Temperate Japonica | 335 | 23.28% | 76.72% |
| Tropical Japonica | 94 | 79.79% | 20.21% |
| Japonica Intermediate | 68 | 64.71% | 35.29% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125136895 | G->A | LOC_Os11g42510(LOC_Os11g42510.2) | INTRON |