Detailed information of SNP:
|
SNP ID:
sf1125137385(Gbrowse)
Chromosome: chr11 Position: 25137385 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 72.90% | 27.10% |
| All Indica | 799 | 63.58% | 36.42% |
| All Japonica | 497 | 91.75% | 8.25% |
| Aus | 66 | 54.55% | 45.45% |
| Indica I | 375 | 89.87% | 10.13% |
| Indica II | 213 | 38.50% | 61.50% |
| Indica Intermediate | 211 | 42.18% | 57.82% |
| Temperate Japonica | 335 | 94.63% | 5.37% |
| Tropical Japonica | 94 | 78.72% | 21.28% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 80.49% | 19.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125137385 | T->C | INTERGENIC | None |