Detailed information of SNP:
|
SNP ID:
sf1125137767(Gbrowse)
Chromosome: chr11 Position: 25137767 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 58.79% | 41.21% |
| All Indica | 797 | 38.27% | 61.73% |
| All Japonica | 497 | 92.96% | 7.04% |
| Aus | 67 | 65.67% | 34.33% |
| Indica I | 374 | 47.33% | 52.67% |
| Indica II | 213 | 25.35% | 74.65% |
| Indica Intermediate | 210 | 35.24% | 64.76% |
| Temperate Japonica | 335 | 96.72% | 3.28% |
| Tropical Japonica | 94 | 77.66% | 22.34% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125137767 | C->T | INTERGENIC | None |