Detailed information of SNP:
|
SNP ID:
sf1125138685(Gbrowse)
Chromosome: chr11 Position: 25138685 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 60.72% | 39.28% |
| All Indica | 798 | 72.93% | 27.07% |
| All Japonica | 497 | 41.85% | 58.15% |
| Aus | 67 | 49.25% | 50.75% |
| Indica I | 374 | 55.08% | 44.92% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 211 | 83.89% | 16.11% |
| Temperate Japonica | 335 | 52.24% | 47.76% |
| Tropical Japonica | 94 | 26.60% | 73.40% |
| Japonica Intermediate | 68 | 11.76% | 88.24% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125138685 | C->T | INTERGENIC | None |