Detailed information of SNP:
|
SNP ID:
sf1125138878(Gbrowse)
Chromosome: chr11 Position: 25138878 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1256 | 55.41% | 44.59% |
| All Indica | 795 | 56.10% | 43.90% |
| All Japonica | 342 | 47.66% | 52.34% |
| Aus | 67 | 80.60% | 19.40% |
| Indica I | 374 | 53.74% | 46.26% |
| Indica II | 212 | 59.43% | 40.57% |
| Indica Intermediate | 209 | 56.94% | 43.06% |
| Temperate Japonica | 271 | 38.01% | 61.99% |
| Tropical Japonica | 42 | 85.71% | 14.29% |
| Japonica Intermediate | 29 | 82.76% | 17.24% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125138878 | G->A | INTERGENIC | None |